[GE users] SGE over yellowdog PS3

rayson rayrayson at gmail.com
Sun May 24 04:57:26 BST 2009


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This is because your Java related path settings are not set up
properly in aimk.site. To build SGE without the external dependencies,
you can try the following steps:

1) ./aimk -no-dump -only-depend
2) scripts/zerodepend
3) ./aimk -no-dump depend
4) ./aimk -no-dump -no-jni -no-java -no-secure -spool-classic

However, if you need the DRMAA Java binding, you will need to take
away the "-no-jni -no-java" flags in step 4, and install a JVM and the
Java compiler, dev libraries, and include files (mainly jni.h).

Let me know if you encounter other problems...

Rayson



On 5/22/09, jigzat <jigzat at gmail.com> wrote:
> Hello everyone, I'm trying to setup a small testing GRID with 3 Playstation 3's running Yellowdog 6.1 for my gradation thesis. I was following the Globus Tutorial but unfortunately there are no binaries for YDL/PS3. I read In some other thread that it is possible to build from source following the same instructions for other platform but I hav not had any success.
>
> I downloaded the source from here:
> http://gridengine.sunsource.net/servlets/ProjectDocumentList/ge-V62u2_1_TAG-src.tar.gz
>
> builted the berkeley db with apparent success but when I try to build SGE I get a lot of error's. can anyone help me out?
>
> This is the output:
>
> [root at auyin source]# ./aimk
> Building in directory: /usr/local/src/gridengine/source
> making in LINUXPPC64_26/ for LINUXPPC64 at host auyin.perrera.local
> _________C_O_R_E__S_Y_S_T_E_M_____________
> gcc -O3 -Wall -Werror -Wstrict-prototypes -DUSE_POLL -DLINUX -DLINUXPPC64 -DLINUXPPC64_26 -D_GNU_SOURCE -DGETHOSTBYNAME_R6 -DGETHOSTBYADDR_R8  -m64 -DLOAD_OPENSSL -I/usr/local/BerkeleyDB.4.7/include/ -DSGE_ARCH_STRING=lx26-ppc64 -DTARGET_64BIT  -DSPOOLING_dynamic -DSECURE -I/off_home/gridengine/openssl-0.9.8h-origin/lx26-ppc64/include -DCOMPILE_DC -D__SGE_COMPILE_WITH_GETTEXT__ -I/usr/local/src/gridengine/source/3rdparty/gettext/LINUXPPC64/include -D__SGE_NO_USERMAPPING__ -I../common -I../libs -I../libs/uti -I../libs/juti -I../libs/gdi -I../libs/japi -I../libs/sgeobj -I../libs/cull -I../libs/rmon -I../libs/comm -I../libs/comm/lists -I../libs/sched -I../libs/evc -I../libs/evm -I../libs/mir -I../libs/lck -I../daemons/common -I../daemons/qmaster -I../daemons/execd -I../daemons/schedd -I../clients/common -I. -I/usr/include -I/usr/include/linux -fPIC -c ../libs/sgeobj/config.c
> In file included from /usr/include/_G_config.h:44,
>                 from /usr/include/libio.h:32,
>                 from /usr/include/stdio.h:72,
>                 from ../libs/sgeobj/config.c:33:
> /usr/include/gconv.h:72: error: expected declaration specifiers or ?...? before ?size_t?
> /usr/include/gconv.h:88: error: expected declaration specifiers or ?...? before ?size_t?
> /usr/include/gconv.h:97: error: expected declaration specifiers or ?...? before ?size_t?
> /usr/include/gconv.h:174: error: expected specifier-qualifier-list before ?size_t?
> In file included from /usr/include/stdio.h:72,
>                 from ../libs/sgeobj/config.c:33:
> /usr/include/libio.h:329: error: expected specifier-qualifier-list before ?size_t?
> /usr/include/libio.h:361: error: expected declaration specifiers or ?...? before ?size_t?
> /usr/include/libio.h:370: error: expected declaration specifiers or ?...? before ?size_t?
> /usr/include/libio.h:486: error: expected ?=?, ?,?, ?;?, ?asm? or ?__attribute__? before ?_IO_sgetn?
> In file included from ../libs/sgeobj/config.c:33:

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