[GE users] Jobs Pending and qrsh fails

neoideo axischire at gmail.com
Fri Apr 2 17:39:58 BST 2010


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are my replies being received on the mailing list??
please someone confirm! i solved the problem but i need to know this first
thanks
Cristobal




On Fri, Apr 2, 2010 at 12:45 PM, rayson <rayrayson at gmail.com<mailto:rayrayson at gmail.com>> wrote:
On 4/2/10, neoideo <axischire at gmail.com<mailto:axischire at gmail.com>> wrote:
> yesterday i was able to submit jobs with qsub or with qrsh without problems,
> everything worked fine.
> now all my jobs just appear pending when i check them with qstat -f. this
> happened after shutdown/power on
> also running jobs list is empty, so its weird.

You can turn on "schedd_job_info" (see sched_conf(5)), and then do a
qstat -j to find out why SGE is not scheduling jobs for you.

Rayson



>
> for example if i run
>
> ijorge:/ cristobal$ qrsh -verbose -q all.q hostname
> Your job 38 ("hostname") has been submitted
> waiting for interactive job to be scheduled ...
>
> Your "qrsh" request could not be scheduled, try again later.
>
> this is a test cluster that i have, so i only have 1 node with qmaster and
> exec in the same machine. i repeat that this was working yesterday, no
> update was installed, shut shutdown the mac.
> i noticed that now the qmaster daemon and execd daemon do not start as
> "root" can that be the problem and how i fix it?
>
> ijorge:/ cristobal$ ps aux | grep sge
> cristobal   225   0.2  0.1   610088   3368   ??  Ss   10:35AM   0:00.77
> /common/bin/darwin-x86/sge_qmaster
> cristobal    55   0.0  0.0   603492   1408   ??  S<s  10:26AM   0:00.31
> /common/bin/darwin-x86/sge_execd
> cristobal   555   0.0  0.0   599780    456 s000  R+   11:10AM   0:00.00 grep
> sge
>
> ijorge:/ cristobal$ ls -la /common/bin/darwin-x86/ | grep sge
> -rwxr-xr-x@  1 root  wheel   158584 Mar 31 18:45 sge_coshepherd
> -rwxr-xr-x@  1 root  wheel  1697376 Mar 31 18:45 sge_execd
> -rwxr-xr-x@  1 root  wheel  2583644 Mar 31 18:45 sge_qmaster
> -rwxr-xr-x@  1 root  wheel  1398848 Mar 31 18:45 sge_shadowd
> -rwxr-xr-x@  1 root  wheel  2499752 Mar 31 18:45 sge_shepherd
> -rwxr-xr-x@  1 root  wheel     2115 Mar 31 18:45 sgeinspect
> -r-s--x--x   1 root  wheel   975652 Mar 31 18:45 sgepasswd
>
>
> ijorge:/ cristobal$ ls -la /Library/LaunchDaemons/ | grep sge
> -rw-r--r--   1 root  wheel   782 Mar 31 23:58
> net.sunsource.gridengine.sgeexecd.plist
> -rw-r--r--   1 root  wheel   786 Mar 31 23:58
> net.sunsource.gridengine.sgeqmaster.plist
>
>
> more info from messages
>
> any help is welcome, thanks in advance!
>
> Cristobal
>
>
>

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