[GE users] qrsh and mpi

bryan bs2222222 at yahoo.com
Tue Mar 9 18:39:21 GMT 2010


Thanks for the information.  Do you happen to have a csh implementation for the script provided in the link?


________________________________
From: reuti <reuti at staff.uni-marburg.de>
To: users at gridengine.sunsource.net
Sent: Mon, March 8, 2010 1:34:09 PM
Subject: Re: [GE users] qrsh and mpi

Am 08.03.2010 um 21:21 schrieb bryan:

> When I use qrsh to grab me multiple processors on my cluster, is
> there an easy way to figure out which nodes gridengine has assigned
> my job so that I can create a machinefile file for use in mpi?

To create the machinefile is the purpose of start_proc_args in the PE.
Please have a look at $SGE_ROOT/mpi for some explanations. Depending
on the MPI implementation you use, this varies though.

Hence the machinefile will be in $TMPDIR, whether it's an interactive
job or not. The problem might be more, to get all variables set
automatically as you get a fresh new interactive shell without
anything inherited from SGE. This depends on the startup mechanism you
used: -builtin-, rsh, ssh or tigth-ssh.

http://gridengine.sunsource.net/ds/viewMessage.do?dsForumId=38&dsMessageId=242892

-- Reuti

PS: To get a faster output of the used nodes you can use:

$ qstat -g t


> Example:
> When I give the command
>
> qrsh -pe mpi 8
>
> grid engine allocates 8 processors for my job.
>
> Then, to find out which nodes these processors are on, I go to a
> different terminal and run the command "qstat -f" and note down
> which nodes have my qlogin job running on them.  I'll then create a
> machinefile for the mpi job that I want to run from what I learned
> from the qstat command.
>
> There has to be a better way to get the information and create the
> machinefile, does anybody know it?
>
> Thanks
>
> Bryan
>

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