[GE users] Is there a way to run prolog scripts (as root) in all machines involved in the Parallel task?

reuti reuti at staff.uni-marburg.de
Thu Mar 11 17:41:19 GMT 2010


Hi,

Am 11.03.2010 um 18:03 schrieb goncalo:

> I'm trying to configure a HPC cluster with infiniband using SGE.
>
> I'm trying to run several openmpi instances in several machines,
> starting them via ssh. However I have the following problem:
>
> - I want to restrict the user application to be able to ssh only to  
> the
> machines declared in PE_HOSTFILE.

why do you want to do so? Open MPI is tighly integrated into SGE as  
long as you compile it --with-sge in the configure step. SGE would  
disallow a `qrsh -inherit ...` to a machine not in the granted list  
of machines. Whether it uses -builtin-, rsh, ssh or tight-ssh as  
startup method doesn't matter.


> I though I could do that with the ssh
> and pam module, adding with some kind of root prolog script the  
> user to
> /etc/ssh/allow.pamlist. However, I do not seem to find a way to run  
> that
> root prolog script in all machines involved in the Parallel task, but
> only in the first machine...

No, it's an RFE:

http://gridengine.sunsource.net/issues/show_bug.cgi?id=3166

In the prolog you can use a loop across the list of machines to do it  
on your own though.

-- Reuti


>
> Is there an easy way to do this
>
> Thanks in Advance
> Cheers
> Goncalo
>
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