[GE users] installed under ge6.2u4

mlmersel Jerry.Mersel at weizmann.ac.il
Tue May 4 07:27:48 BST 2010


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Thank you andy.

With Blessings
and Best regards,

Jerry
2363

You shall do no unrighteousness in judgment; you shall not favor the poor, nor favor the mighty; but in righteousness you shall judge your neighbor.
(Torah portion, Kedoshim, Leviticus 19:15)

> Hi,
>
>
>> Yes. I've seen this.
>> And I wanted to ask.
>>
>> Why does:
>>
>> mv <arch>/sge_shepherd <arch>/sge_shepherd.sge61
>>
>> allow the daemons to contin ue while a copy does not.
>
> a Unix copy creates a new file, i.e. a new inode. An open file in Unix is
> accessed via the inode and copying a new file over the old one overwrites
> the file behind that inode. Typically that results in a crash of the
> affected binary sooner or later. "mv" (in the same filesystem of course)
> does not change the inode, it just creates a new filename.
>
> Andy
>
>
>
>
>>
>> Which
>> scripts do I need to change (from ge6.2u4 to sge).
>> I found:
>>
>> sgeexecd
>> sgemaster
>> settings.csh
>> settings.sh
>> bootstrap
>> as well as binaries in the database.
>>
>>
>> With Blessings
>> and Best regards, and thanks.
>>
>> Jerry
>> 2363
>>
>> You shall do no unrighteousness in judgment; you
>> shall not favor the poor, nor favor the mighty; but in righteousness you
>> shall judge your neighbor.
>> (Torah portion, Kedoshim, Leviticus
>> 19:15)
>>
>> > Hi,
>> >
>> > Am 03.05.2010 um 08:12
>> schrieb mlmersel:
>> >
>> >> So if I understand you
>> properly I shoulkd do something like this:
>> >>
>> >>
>> (softstop/stop daemons)
>> >> mv /usr/ge6.2u4 to /usr/sge
>> >> untar onto /usr/sge
>> >> ln -s /usr/sge
>> /usr/ge6.2u4
>> >> (start daemons)
>> >
>> > this
>> should work (although I never tried it myself this way). To upgrade a
>> > live system, please check this:
>> >
>> >
>> http://gridengine.sunsource.net/install62patch.txt
>> >
>> > as
>> you will have to rename the shepherd. Maybe afterwards you can rename
>> > all the spooling directories over time when it's more feasible with
>> your
>> > scheduled jobs (or even make them local to each node).
>> >
>> > -- Reuti
>> >
>> >
>> >> Is that
>> correct?
>> >> Which scripts will I have to change?
>> >> Will the jobs continue to work?
>> >>
>> >>
>> >>
>> >> With Blessings
>> >> and
>> Best regards,
>> >>
>> >> Jerry
>> >> 2363
>> >> > Hi,
>> >> >
>> >> > Am 02.05.2010 um
>> 16:11 schrieb mlmersel:
>> >> >
>> >> >> I
>> installed gridengine under directory ge6.2u4.
>> >> >> When
>> I install the latest patch this will be a misnomer.
>> >>
>> >>
>> >> >> If I change the directory to ge6.2u5 what
>> else should I change.
>> >> >> Can the name change cause
>> problems? Should I just live with this
>> >> >> misnomer
>> >> >> or can I safely fix it.
>> >> >
>> >> > easiest is to untar always in the same location. The spool
>> directories
>> >> > could be located under
>> ge6.2u4/default/spool for example which
>> >> > wouldn't be
>> there then.
>> >> >
>> >> > If you name the
>> directory always /usr/sge you can use a symbolic link
>> >> >
>> for documentation pupose.
>> >> >
>> >> > --
>> Reuti
>> >> >
>> >> >
>> >> >
>> >> >> Thanks.
>> >> >>
>> >>
>> >>
>> >> >> With Blessings
>> >> >> and
>> Best regards,
>> >> >>
>> >> >> Jerry
>> >> >> 2363
>> >> >>
>> >> >> You
>> shall do no unrighteousness in judgment; you shall not favor the
>> >> >> poor, nor favor the mighty; but in righteousness you
>> shall judge
>> >> >> your neighbor.
>> >> >>
>> (Torah portion, Kedoshim, Leviticus 19:15)
>> >> >
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>> >> >
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>> >> >
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>> e-mail:
>> >> >
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>> >> >
>> >
>>
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>> >
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>> >
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>> >
>> >
>>
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