[GE users] Job remain in qw state

reuti reuti at staff.uni-marburg.de
Mon Nov 29 13:30:58 GMT 2010


Am 29.11.2010 um 13:30 schrieb adarsh:

> Dear all,
> 
> Thanks for U'r replies, now i Have successfully integrated Hadoop with sge such that my ./qhost -F | grep hdfs command shows
> all data paths.
> 
> Now when I ran simple wordcount job, my job remain at qw state.
> Logs in Execution hosts says :
> 
> 11/29/2010 16:47:34|  main|ws37-user-lin|E|shepherd of job 1.1 exited with exit status = 27
> 11/29/2010 16:47:34|  main|ws37-user-lin|E|can't open usage file "active_jobs/1.1/usage" for job 1.1: No such file or directory
> 11/29/2010 16:47:34|  main|ws37-user-lin|E|11/29/2010 16:47:34 [0:9462]: unable to find shell "/bin/csh"

If you didn't install the csh, you will most likely want:

$ qconf -sq all.q
...
shell                 /bin/sh
...
shell_start_mode      unix_behavior

while the first entry will only be honored for "posix_compliant" setting of the second entry.

==

If you don't want to change the queue's setting, you can also submit your jobs with:

$ qsub -S /bin/sh ...

instead.

==

The job might now be in error state (check `qstat`), and you have to issue `qmod -cj 27`


-- Reuti


> 
> How to get rid of this.
> Whether scp accounting file to all nodes is sufficient or we must have mount /default/common on NFS.
> 
> I simple copied it to all execution hosts.
> 
> Thanks in Advance
> Adarsh Sharma
> 
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