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Ticket Resolution Summary Owner Reporter
#1350 duplicate [SGE-bugs] Error building from src.rpm on RHEL 6 dlove
Description
Adam DeConinck <adeconinck@rsystemsinc.com> writes:

> On 8/10/2011 9:07 AM, Dave Love wrote:
>> Adam DeConinck <adeconinck@rsystemsinc.com> writes:
>>
>>> Downloaded gridenine-8.0.0a-2.src.rpm from
>>> http://arc.liv.ac.uk/downloads/SGE/releases/8.0.0a/.  Server is a test
>>> machine running RHEL 6.1 x86_64.  Installed the src rpm (as root), and
>>> confirmed that all dependencies were in place, then ran "rpmbuild -bb
>>> --without java gridengine.spec"
>>>
>>> Build failed with the following output:
>>>
>>> echo libXmt.a
>>> libXmt.a
>>> gcc -c -DALLOW_COLUMN_RESIZE -DDRAW_RESIZE_SHADOW -I../Xmt310
>>> -DSGE_ARCH_STRING=\"lx-amd64\" -O3 -Wall -Wstrict-prototypes -DUSE_POLL
>>> -DLINUX -DLINUXAMD64 -DLINUXAMD64 -D_GNU_SOURCE -DGETHO
>>> gcc -c -DALLOW_COLUMN_RESIZE -DDRAW_RESIZE_SHADOW -I../Xmt310
>>> -DSGE_ARCH_STRING=\"lx-amd64\" -O3 -Wall -Wstrict-prototypes -DUSE_POLL
>>> -DLINUX -DLINUXAMD64 -DLINUXAMD64 -D_GNU_SOURCE -DGETHO
>>> gcc -c -DALLOW_COLUMN_RESIZE -DDRAW_RESIZE_SHADOW -I../Xmt310
>>> -DSGE_ARCH_STRING=\"lx-amd64\" -O3 -Wall -Wstrict-prototypes -DUSE_POLL
>>> -DLINUX -DLINUXAMD64 -DLINUXAMD64 -D_GNU_SOURCE -DGETHO
>>> In file included from /usr/include/X11/Xft/Xft.h:39,
>>>                  from /usr/include/Xm/TextFP.h:47,
>>>                  from ../Xbae/CellP.h:35,
>>>                  from ../Xbae/Cell.c:28:
>>> /usr/include/ft2build.h:56:38: error: freetype/config/ftheader.h: No
>>> such file or directory

This definitely looks like a system problem, but I don't understand the
problem on RH6 yet.  On RH5

  $ cc -E - >/dev/null <<+
  #include <Xm/TextFP.h>
  +

works, but on RH6, it complains about the file, as above and, in fact,
including just Xft.h fails as above.

I see that the EPEL gridengine package has added

  export SGE_INPUT_CFLAGS="$RPM_OPT_FLAGS -I%{_includedir}/freetype2"

to the spec %build section before running aimk, but I think I'll put a
workaround in aimk -- patch available shortly.

Thanks for the report.
#1435 duplicate qalter -w says held job is already running dlove
Description

The message from qalter -w p on a held job is

verification: job is already running

Need to call job_get_hold_state on the right thing in verify_suitable_queues

#1459 duplicate USE_CGROUPS sets host in error state mikaelb
Description

I have been testing the USE_CGROUPS option that is available to execd. When USE_CGROUPS is enabled it works fine to submit a single job to a queue instance on an execution node. However, if a second job is submitted to the same queue instance, it fails and sets the queue instance in error state due to that the shepherd exited with return code 7. The shepherd trace gives the this:

Shepherd trace:
03/13/2013 22:39:47 [0:17310]: shepherd called with uid = 0, euid = 0
03/13/2013 22:39:47 [400:17310]: starting up 8.1.3
03/13/2013 22:39:47 [400:17310]: can't open file pid: Permission denied

Jobs that successfully start have job spool directories owned by the gridadmin administrative user (the user SGE runs as), while the spool directories of the failed jobs are still owned by root. If I turn off USE_CGROUPS everything works ok. Initially I thought this was som race condition which can be triggered when jobs are started rapidly, but some more testing showed that it was when a second job was started on the same execution host.

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