Custom Query (1181 matches)
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| Ticket | Resolution | Summary | Owner | Reporter |
|---|---|---|---|---|
| #456 | invalid | IZ2365: qstat: inconsistent date formats | olesen | |
| Description |
[Imported from gridengine issuezilla http://gridengine.sunsource.net/issues/show_bug.cgi?id=2365]
Issue #: 2365 Platform: All Reporter: olesen (olesen)
Component: gridengine OS: All
Subcomponent: clients Version: current CC: None defined
Status: NEW Priority: P3
Resolution: Issue type: DEFECT
Target milestone: ---
Assigned to: roland (roland)
QA Contact: roland
URL:
* Summary: qstat: inconsistent date formats
Status whiteboard:
Attachments:
Issue 2365 blocks:
Votes for issue 2365:
Opened: Tue Sep 18 06:13:00 -0700 2007
------------------------
"qstat -xml" reports the job start time is reported in iso-8601
schemas/qstat/qstat.xsd
<xs:element name="JB_submission_time" type="xs:dateTime" minOccurs="0"/>
<xs:element name="JAT_start_time" type="xs:dateTime" minOccurs="0"/>
whereas "qstat -xml -j '*'" reports the job start time (and all other times) in
terms of the epoch.
schemas/qstat/detailed_job_info.xsd
<xs:element name="JB_submission_time" type="xs:unsignedInt"/>
<xs:element name="JB_execution_time" type="xs:unsignedInt"/>
<xs:element name="JAT_start_time" type="xs:unsignedInt"/>
<xs:element name="JAT_end_time" type="xs:unsignedInt"/>
I suspect that the execution time could be more useful in seconds rather than in
a date format
MailingList thread:
http://gridengine.sunsource.net/servlets/ReadMsg?list=dev&msgNo=3185
http://gridengine.sunsource.net/servlets/ReadMsg?list=dev&msgNo=3186
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| #459 | fixed | IZ2379: manpage of qconf uses "fname" and "file, all should be "fname" | reuti | |
| Description |
[Imported from gridengine issuezilla http://gridengine.sunsource.net/issues/show_bug.cgi?id=2379]
Issue #: 2379 Platform: Macintosh Reporter: reuti (reuti)
Component: gridengine OS: All
Subcomponent: man Version: 6.1u2 CC: None defined
Status: NEW Priority: P3
Resolution: Issue type: DEFECT
Target milestone: ---
Assigned to: andreas (andreas)
QA Contact: andreas
URL:
* Summary: manpage of qconf uses "fname" and "file, all should be "fname"
Status whiteboard:
Attachments:
Issue 2379 blocks:
Votes for issue 2379:
Opened: Sun Sep 30 11:42:00 -0700 2007
------------------------
There are entries in the manpage of qconf:
-Aconf file_list <add configurations>
-Ahgrp file <add host group config>
-Mhgrp file <modify host group config.>
better:
-Aconf fname_list <add configurations>
-Ahgrp fname <add host group configuration>
-Mhgrp fname <modify host group configuration>
(other entries also use the "configuration" in full and not abbreviated).
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| #467 | fixed | IZ2393: qrsh -inherit should access the 'rsh_command'-cache more persevering | brs | |
| Description |
[Imported from gridengine issuezilla http://gridengine.sunsource.net/issues/show_bug.cgi?id=2393]
Issue #: 2393 Platform: PC Reporter: brs (brs)
Component: gridengine OS: Linux
Subcomponent: execution Version: 6.1u4 CC: None defined
Status: STARTED Priority: P3
Resolution: Issue type: DEFECT
Target milestone: ---
Assigned to: roland (roland)
QA Contact: pollinger
URL:
* Summary: qrsh -inherit should access the 'rsh_command'-cache more persevering
Status whiteboard:
Attachments:
Issue 2393 blocks:
Votes for issue 2393:
Opened: Mon Oct 8 08:57:00 -0700 2007
------------------------
This is an intermittent problem that occurs with greater frequency as you
increase the number of slots used in a parallel environment. It seems to affect
only OpenMPI jobs.
Jobs would fail with the following messages from OpenMPI from a fairly random
number of qrsh processes (sometimes 2 or 3 sometimes almost half -- considering
128 processors -- of the calls would fail):
[rcn-ib-0013.rc.usf.edu:32328] ERROR: A daemon on node rcn-ib-0003.rc.usf.edu
failed to start as expected.
[rcn-ib-0013.rc.usf.edu:32328] ERROR: There may be more information available from
[rcn-ib-0013.rc.usf.edu:32328] ERROR: the 'qstat -t' command on the Grid Engine
tasks.
[rcn-ib-0013.rc.usf.edu:32328] ERROR: If the problem persists, please restart the
[rcn-ib-0013.rc.usf.edu:32328] ERROR: Grid Engine PE job
[rcn-ib-0013.rc.usf.edu:32328] ERROR: The daemon exited unexpectedly with status
255.
Then, a core would be dumped in the user's home directory which was from the
qrsh (or qsh) executable. A quick backtrace with gdb revealed that qrsh was
failing on a call to execvp. After some investigation, this call was found in
source/clients/qsh/qsh.c:789 (as of a cvs checkout from 10/08/2007). Though I
am reporting this bug with 6.0u11, I also reproduced it at one point with 6.1u2.
I've gotten around this bug for the time being by LD_PRELOADing the following code:
/*
* Place holder library to fix bug with qsh.c not correctly passing
* arguments to execvp()
*/
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
#include <stdio.h>
#include <sys/utsname.h>
#include <sys/types.h>
#define __USE_GNU
#include <dlfcn.h>
int execvp(const char *file, char *const argv[]){
int pid, i = 1;
const char *file_n;
char **args;
static int (*func)(const char*, char *const *);
struct utsname u_name;
uname(&u_name);
pid = (int)getpid();
if (file == NULL){
file_n = "/opt/sge-tools/rsh";
fprintf (stderr, "[%s:%d] execvp(): had to modify null
arguments\n", u_name.nodename, pid);
} else file_n = (const char *)file;
if (argv[0] == NULL) args[0] = "/opt/sge-tools/rsh";
else args[0] = (char *)argv[0];
if (argv[i] != NULL){
do {
args[i] = (char *)argv[i];
} while (argv[++i] != NULL);
}
func = (int (*)(const char*, char *const *))dlsym(RTLD_NEXT, "execvp");
return (func(file_n, args));
}
Basically, it ensures that the arguments passed to execvp are sane and modifies
them if they are not. I also needed a wrapper for rsh (hence
/opt/sge-tools/rsh) so that the correct arch would be selected in $SGE_ROOT/utilbin.
Here's some general information:
qconf -sq rcnib.q
qname rcnib.q
hostlist @rcnibNodes
seq_no 51
load_thresholds NONE
suspend_thresholds NONE
nsuspend 1
suspend_interval 00:05:00
priority 0
min_cpu_interval 00:05:00
processors 2
qtype BATCH INTERACTIVE
ckpt_list NONE
pe_list make mpich-p4 ompi-ddr mpich-schrod
rerun FALSE
slots 4
tmpdir /opt/sge/tmp
shell /bin/bash
prolog NONE
epilog NONE
shell_start_mode posix_compliant
starter_method NONE
suspend_method NONE
resume_method NONE
terminate_method NONE
notify 00:00:60
owner_list NONE
user_lists operators
xuser_lists NONE
subordinate_list NONE
complex_values i_ib=true,p_low=false,t_devel=false
projects NONE
xprojects NONE
calendar NONE
initial_state default
s_rt INFINITY
h_rt INFINITY
s_cpu INFINITY
h_cpu INFINITY
s_fsize INFINITY
h_fsize INFINITY
s_data INFINITY
h_data INFINITY
s_stack INFINITY
h_stack INFINITY
s_core INFINITY
h_core 2M
s_rss INFINITY
h_rss INFINITY
s_vmem INFINITY
h_vmem INFINITY
qconf -sp ompi-ddr
pe_name ompi-ddr
slots 1024
user_lists NONE
xuser_lists NONE
start_proc_args /bin/true
stop_proc_args /bin/true
allocation_rule $round_robin
control_slaves TRUE
job_is_first_task FALSE
urgency_slots min
qconf -sconf
global:
execd_spool_dir /opt/sge/rc/spool
mailer /bin/mail
xterm /usr/bin/X11/xterm
load_sensor none
prolog none
epilog none
shell_start_mode posix_compliant
login_shells sh,ksh,csh,tcsh
min_uid 0
min_gid 0
user_lists none
xuser_lists none
projects none
xprojects none
enforce_project false
enforce_user auto
load_report_time 00:00:40
max_unheard 00:05:00
reschedule_unknown 00:00:00
loglevel log_warning
administrator_mail admins@rc.usf.edu
set_token_cmd none
pag_cmd none
token_extend_time none
shepherd_cmd none
qmaster_params none
execd_params none
reporting_params accounting=true reporting=false \
flush_time=00:00:15 joblog=false sharelog=00:00:00
finished_jobs 100
gid_range 10000-10500
qlogin_command telnet
qlogin_daemon /usr/sbin/in.telnetd
rlogin_daemon /usr/sbin/in.rlogind
rsh_command /opt/sge-tools/rsh
max_aj_instances 2000
max_aj_tasks 75000
max_u_jobs 0
max_jobs 0
auto_user_oticket 0
auto_user_fshare 100
auto_user_default_project none
auto_user_delete_time 86400
delegated_file_staging false
reprioritize 1
And some more detailed output. With the following code LD_PRELOADed, a good
call to execvp looks like this:
[rcn-ib-0037.rc.usf.edu:8123] execvp(): /opt/sge-tools/rsh /opt/sge-tools/rsh -n
-p 34391 rcn-ib-0027.rc.usf.edu exec '/opt/sge/utilbin/lx24-amd64/qrsh_starter'
'/usr/local/sge-6.0-u11/rc/spool/rcn-ib-0027/active_jobs/4268.1/1.rcn-ib-0027'
noshell
A bad call will look something like this:
[rcn-ib-0037.rc.usf.edu:8150] execvp(): (null) (null) -n -p 34537
rcn-ib-0028.rc.usf.edu exec '/opt/sge/utilbin/lx24-amd64/qrsh_starter'
'/usr/local/sge-6.0-u11/rc/spool/rcn-ib-0028/active_jobs/4268.1/1.rcn-ib-0028'
noshell
Here's the code:
#include <stdlib.h>
#include <string.h>
#include <unistd.h>
#include <stdio.h>
#include <sys/utsname.h>
#include <sys/types.h>
#define __USE_GNU
#include <dlfcn.h>
int execvp(const char *file, char *const argv[]){
int pid, i = 1;
static int (*func)(const char*, char *const *);
struct utsname u_name;
uname(&u_name);
pid = (int)getpid();
fprintf (stderr, "[%s:%d] execvp(): %s %s ", u_name.nodename, pid, file,
argv[0]);
do {
fprintf(stderr, "%s ", argv[i]);
} while (argv[++i] != NULL);
fprintf(stderr, "\n");
func = (int (*)(const char*, char *const *))dlsym(RTLD_NEXT, "execvp");
return (func(file, argv));
}
I can provide more information if required.
------- Additional comments from brs Mon Oct 8 13:02:57 -0700 2007 -------
Ok, the actual execvp is in source/clients/qrsh/qrsh_starter.c, line 728.
Should have looked more carefully.
------- Additional comments from brs Mon Oct 8 13:05:21 -0700 2007 -------
changed ticket summary to reflect correct source file
------- Additional comments from brs Sun Apr 6 10:20:19 -0700 2008 -------
This issue still exists in 6.1u4. Who can look at this issue with me?
------- Additional comments from brs Sun Apr 6 10:28:49 -0700 2008 -------
Would like someone to look at this ticket. Perhaps it was sent to the wrong person.
------- Additional comments from andreas Mon Apr 7 08:55:36 -0700 2008 -------
Moving this to execution subcomponent.
------- Additional comments from brs Mon Apr 28 11:53:04 -0700 2008 -------
So, from more investigation, I think I've narrowed the problem down. In short,
using NFS (at least with Solaris 10 as the NFS server) doesn't work reliably.
It seems that multiple qrsh -inherit processes are making gdi requests to
qmaster for the rsh_command data. I don't know how many gdi requests qmaster
can handle simultaneously from a single job, but it appears that some of the
qrsh -inherits that are spawned by mpirun can't read the data from
qrsh_client_cache and end up getting to the gdi2_get_configuration line before
the first qrsh can write his data out. This results in a large-ish parallel job
making tons of gdi requests on qmaster. My guess is that some of these gdi
requests aren't handled properly and so some qrsh'es end up running execvp
without any command string.
Long story short: NFS server on Solaris 10 w/ SGE: bad. Let me know what you think.
------- Additional comments from brs Mon Apr 28 11:53:54 -0700 2008 -------
For clarification, I meant NFS as a path for tmpdir.
------- Additional comments from brs Mon Apr 28 11:55:10 -0700 2008 -------
Also, it appears that some type of file locking would completely fix this issue
if the gdi hypothesis is true.
------- Additional comments from andreas Tue Apr 29 08:15:24 -0700 2008 -------
The NFS issue I can't evaluate, but I think the code in get_client_name() should
be more persevering as to deal with such cases. As it is now qrsh -inherit tries
only once to read the cache and does then immediately a GDI-request as fallback.
The GDI query is certainly needed as fallback, but doing a couple of retries is
certainly not wrong if qrsh could stat(2) the cache file before:
if (tmpdir != NULL) {
FILE *cache;
/* build filename of cache file */
sge_dstring_init(&cache_name_dstring, cache_name_buffer, SGE_PATH_MAX);
cache_name = sge_dstring_sprintf(&cache_name_dstring, "%s/%s",
tmpdir, QRSH_CLIENT_CACHE);
cache = fopen(cache_name, "r");
if (cache != NULL) {
char cached_command[SGE_PATH_MAX];
if (fgets(cached_command, SGE_PATH_MAX, cache) != NULL) {
if (strcasecmp(cached_command, "builtin") == 0) {
g_new_interactive_job_support = true;
}
FCLOSE(cache);
DPRINTF(("found cached client name: %s\n", cached_command));
DEXIT;
return strdup(cached_command);
}
FCLOSE(cache);
}
}
|
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